HL_5JPQ_010

3D structure

PDB id

5JPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.3 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

5JPQ|1|2|U|453

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JPQ_010 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.2797

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

5JPQ|1|2|U|450
5JPQ|1|2|A|451
5JPQ|1|2|A|452
5JPQ|1|2|U|453
5JPQ|1|2|U|454
5JPQ|1|2|C|455
5JPQ|1|2|A|456

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 0

eS24

Chain p

eS4