HL_5JPQ_014

3D structure

PDB id

5JPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.3 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JPQ_014 not in the Motif Atlas

Homologous match to HL_4V88_207

Geometric discrepancy: 0.3463

The information below is about HL_4V88_207

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5JPQ|1|2|C|937
5JPQ|1|2|G|938
5JPQ|1|2|A|939
5JPQ|1|2|A|940
5JPQ|1|2|A|941
5JPQ|1|2|G|942

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain g

KRR1 small subunit processome component

Chain v

uS15