HL_5JPQ_017

3D structure

PDB id

5JPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.3 Å

Loop

Sequence

GGCAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JPQ_017 not in the Motif Atlas

Geometric match to HL_4LFB_004

Geometric discrepancy: 0.2263

The information below is about HL_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

5JPQ|1|2|G|1178
5JPQ|1|2|G|1179
5JPQ|1|2|C|1180
5JPQ|1|2|A|1460
5JPQ|1|2|C|1461

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain c

Putative U3 small nucleolar ribonucleoprotein