HL_5JPQ_019

3D structure

PDB id

5JPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.3 Å

Loop

Sequence

GUCAUCAGC

Length

9 nucleotides

Bulged bases

5JPQ|1|2|G|1601

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JPQ_019 not in the Motif Atlas

Homologous match to HL_4V88_220

Geometric discrepancy: 0.3448

The information below is about HL_4V88_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5JPQ|1|2|G|1594
5JPQ|1|2|U|1595
5JPQ|1|2|C|1596
5JPQ|1|2|A|1597
5JPQ|1|2|U|1598
5JPQ|1|2|C|1599
5JPQ|1|2|A|1600
5JPQ|1|2|G|1601
5JPQ|1|2|C|1602

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain c

Putative U3 small nucleolar ribonucleoprotein