HL_5JPQ_025

3D structure

PDB id

5JPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.3 Å

Loop

Sequence

UAAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JPQ_025 not in the Motif Atlas

Homologous match to HL_8CRE_199

Geometric discrepancy: 0.532

The information below is about HL_8CRE_199

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

5JPQ|1|2|U|368
5JPQ|1|2|A|369
5JPQ|1|2|A|370
5JPQ|1|2|G|371
5JPQ|1|2|G|372
5JPQ|1|2|G|373

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain p

eS4

Chain u

uS4