HL_5JTE_008

3D structure

PDB id

5JTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JTE_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1509

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5JTE|1|AA|A|320
5JTE|1|AA|A|321
5JTE|1|AA|C|322
5JTE|1|AA|U|323
5JTE|1|AA|G|324
5JTE|1|AA|A|325
5JTE|1|AA|G|326
5JTE|1|AA|A|327
5JTE|1|AA|C|328
5JTE|1|AA|A|329
5JTE|1|AA|C|330
5JTE|1|AA|G|331
5JTE|1|AA|G|332
5JTE|1|AA|U|333

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AT

30S ribosomal protein S20