HL_5JTE_029

3D structure

PDB id

5JTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAUCAGAAUGC

Length

11 nucleotides

Bulged bases

5JTE|1|AA|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JTE_029 not in the Motif Atlas

Homologous match to HL_4LFB_030

Geometric discrepancy: 0.3265

The information below is about HL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86432.1

Basepair signature

cWW-tWH-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

5JTE|1|AA|G|1356
5JTE|1|AA|A|1357
5JTE|1|AA|U|1358
5JTE|1|AA|C|1359
5JTE|1|AA|A|1360
5JTE|1|AA|G|1361
5JTE|1|AA|A|1362
5JTE|1|AA|A|1363
5JTE|1|AA|U|1364
5JTE|1|AA|G|1365
5JTE|1|AA|C|1366

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AI

30S ribosomal protein S9

Chain AJ

30S ribosomal protein S10

Chain AN

30S ribosomal protein S14