HL_5JTE_032

3D structure

PDB id

5JTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAGGGUAG

Length

8 nucleotides

Bulged bases

5JTE|1|AW|G|18, 5JTE|1|AW|G|19, 5JTE|1|AW|U|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JTE_032 not in the Motif Atlas

Homologous match to HL_3WFS_001

Geometric discrepancy: 0.1826

The information below is about HL_3WFS_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JTE|1|AW|C|13
5JTE|1|AW|A|14
5JTE|1|AW|G|15
5JTE|1|AW|G|18
5JTE|1|AW|G|19
5JTE|1|AW|U|20
5JTE|1|AW|A|21
5JTE|1|AW|G|22

Current chains

Chain AW

A-site Lysine tRNA Lysine

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA