HL_5JTE_037
3D structure
- PDB id
- 5JTE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- G(5MU)(PSU)CGAGUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JTE_037 not in the Motif Atlas
- Homologous match to HL_6CFJ_108
- Geometric discrepancy: 0.135
- The information below is about HL_6CFJ_108
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 96
Unit IDs
5JTE|1|AX|G|53
5JTE|1|AX|5MU|54
5JTE|1|AX|PSU|55
5JTE|1|AX|C|56
5JTE|1|AX|G|57
5JTE|1|AX|A|58
5JTE|1|AX|G|59
5JTE|1|AX|U|60
5JTE|1|AX|C|61
Current chains
- Chain AX
- P-site tRNA Aspartate
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BF
- 50S ribosomal protein L5
- Chain BM
- 50S ribosomal protein L16
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