HL_5JTE_039
3D structure
- PDB id
- 5JTE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CCU(CM0)AC(6MZ)AG
- Length
- 9 nucleotides
- Bulged bases
- 5JTE|1|AY|U|33
- QA status
- Modified nucleotides: CM0, 6MZ
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JTE_039 not in the Motif Atlas
- Homologous match to HL_6UGG_005
- Geometric discrepancy: 0.2023
- The information below is about HL_6UGG_005
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_11974.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 17
Unit IDs
5JTE|1|AY|C|31
5JTE|1|AY|C|32
5JTE|1|AY|U|33
5JTE|1|AY|CM0|34
5JTE|1|AY|A|35
5JTE|1|AY|C|36
5JTE|1|AY|6MZ|37
5JTE|1|AY|A|38
5JTE|1|AY|G|39
Current chains
- Chain AY
- E-site tRNA Valine
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AG
- 30S ribosomal protein S7
- Chain AK
- 30S ribosomal protein S11
- Chain AV
- mRNA
- Chain AX
- Transfer RNA; tRNA
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