HL_5JTE_083

3D structure

PDB id

5JTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

5JTE|1|BA|U|1729, 5JTE|1|BA|C|1730, 5JTE|1|BA|C|1732

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JTE_083 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.3691

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

5JTE|1|BA|C|1727
5JTE|1|BA|C|1728
5JTE|1|BA|U|1729
5JTE|1|BA|C|1730
5JTE|1|BA|G|1731
5JTE|1|BA|C|1732
5JTE|1|BA|G|1733

Current chains

Chain BA

23S ribosomal RNA

Nearby chains