3D structure

PDB id
5JTE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
ACU(U8U)UU(T6A)A(PSU)
Length
9 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5JTE_113 not in the Motif Atlas
Homologous match to HL_5E81_235
Geometric discrepancy: 0.1658
The information below is about HL_5E81_235
Detailed Annotation
tRNA anticodon loop
Broad Annotation
Anticodon loop
Motif group
HL_81376.1
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
29

Unit IDs

5JTE|1|AW|A|31
5JTE|1|AW|C|32
5JTE|1|AW|U|33
5JTE|1|AW|U8U|34
5JTE|1|AW|U|35
5JTE|1|AW|U|36
5JTE|1|AW|T6A|37
5JTE|1|AW|A|38
5JTE|1|AW|PSU|39

Current chains

Chain AW
A-site Lysine tRNA Lysine

Nearby chains

Chain AA
Small subunit ribosomal RNA; SSU rRNA
Chain AL
30S ribosomal protein S12
Chain AV
mRNA
Chain BA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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