HL_5JU8_033
3D structure
- PDB id
- 5JU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CCU(QUO)UC(2MA)CG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: QUO, 2MA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JU8_033 not in the Motif Atlas
- Homologous match to HL_4TUE_034
- Geometric discrepancy: 0.1064
- The information below is about HL_4TUE_034
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
5JU8|1|AX|C|31
5JU8|1|AX|C|32
5JU8|1|AX|U|33
5JU8|1|AX|QUO|34
5JU8|1|AX|U|35
5JU8|1|AX|C|36
5JU8|1|AX|2MA|37
5JU8|1|AX|C|38
5JU8|1|AX|G|39
Current chains
- Chain AX
- P-site tRNA Aspartate
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AI
- 30S ribosomal protein S9
- Chain AV
- mRNA
- Chain AY
- Transfer RNA; tRNA
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