HL_5JU8_037

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

G(5MU)(PSU)CGAUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JU8_037 not in the Motif Atlas

Homologous match to HL_1U0B_003

Geometric discrepancy: 0.3188

The information below is about HL_1U0B_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

5JU8|1|AY|G|53
5JU8|1|AY|5MU|54
5JU8|1|AY|PSU|55
5JU8|1|AY|C|56
5JU8|1|AY|G|57
5JU8|1|AY|A|58
5JU8|1|AY|U|59
5JU8|1|AY|C|60
5JU8|1|AY|C|61

Current chains

Chain AY

E-site tRNA Valine

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA