HL_5JU8_041

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

5JU8|1|BA|U|138, 5JU8|1|BA|U|139

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JU8_041 not in the Motif Atlas

Homologous match to HL_5J7L_137

Geometric discrepancy: 0.2335

The information below is about HL_5J7L_137

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32392.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

5JU8|1|BA|U|137
5JU8|1|BA|U|138
5JU8|1|BA|U|139
5JU8|1|BA|C|140
5JU8|1|BA|G|141
5JU8|1|BA|A|142

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BT

50S ribosomal protein L23