HL_5JU8_050

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

5JU8|1|BA|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JU8_050 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0889

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5JU8|1|BA|G|410
5JU8|1|BA|G|411
5JU8|1|BA|A|412
5JU8|1|BA|C|413
5JU8|1|BA|C|414
5JU8|1|BA|A|415
5JU8|1|BA|U|416
5JU8|1|BA|C|417

Current chains

Chain BA

23S ribosomal RNA

Nearby chains