3D structure

PDB id
5JU8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
UGUUGAAAAA
Length
10 nucleotides
Bulged bases
5JU8|1|BA|U|747, 5JU8|1|BA|A|751, 5JU8|1|BA|A|752
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5JU8_059 not in the Motif Atlas
Homologous match to HL_4WF9_023
Geometric discrepancy: 0.1315
The information below is about HL_4WF9_023
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_88205.2
Basepair signature
cWW-cWS-tSW-F-F
Number of instances in this motif group
7

Unit IDs

5JU8|1|BA|U|744
5JU8|1|BA|G|745
5JU8|1|BA|U|746
5JU8|1|BA|U|747
5JU8|1|BA|G|748
5JU8|1|BA|A|749
5JU8|1|BA|A|750
5JU8|1|BA|A|751
5JU8|1|BA|A|752
5JU8|1|BA|A|753

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B0
50S ribosomal protein L32
Chain B2
50S ribosomal protein L34
Chain B5
ErmBL
Chain BD
50S ribosomal protein L3
Chain BS
50S ribosomal protein L22

Coloring options:


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