HL_5JU8_060

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

5JU8|1|BA|A|781, 5JU8|1|BA|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JU8_060 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.2663

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

5JU8|1|BA|U|779
5JU8|1|BA|G|780
5JU8|1|BA|A|781
5JU8|1|BA|A|782
5JU8|1|BA|A|783
5JU8|1|BA|G|784
5JU8|1|BA|G|785

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B5

ErmBL

Chain BC

50S ribosomal protein L2