HL_5JU8_091

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

5JU8|1|BA|A|2268, 5JU8|1|BA|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JU8_091 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.1056

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

5JU8|1|BA|C|2264
5JU8|1|BA|U|2265
5JU8|1|BA|A|2266
5JU8|1|BA|A|2267
5JU8|1|BA|A|2268
5JU8|1|BA|G|2269
5JU8|1|BA|A|2270
5JU8|1|BA|G|2271
5JU8|1|BA|U|2272
5JU8|1|BA|A|2273
5JU8|1|BA|A|2274
5JU8|1|BA|C|2275
5JU8|1|BA|G|2276

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BM

50S ribosomal protein L16

Chain BW

50S ribosomal protein L27