HL_5JUU_001
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GUUGAUCCUGC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUU_001 not in the Motif Atlas
- Homologous match to HL_8C3A_192
- Geometric discrepancy: 0.152
- The information below is about HL_8C3A_192
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89881.3
- Basepair signature
- cWW-tHW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5JUU|1|A|G|7
5JUU|1|A|U|8
5JUU|1|A|U|9
5JUU|1|A|G|10
5JUU|1|A|A|11
5JUU|1|A|U|12
5JUU|1|A|C|13
5JUU|1|A|C|14
5JUU|1|A|U|15
5JUU|1|A|G|16
5JUU|1|A|C|17
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain EC
- IRES
- Chain UB
- uS12 (yeast S23)
- Chain ZA
- uS5 (yeast S2)
Coloring options: