HL_5JUU_002

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAAUUUAUACAG

Length

12 nucleotides

Bulged bases

5JUU|1|A|U|77

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUU_002 not in the Motif Atlas

Geometric match to HL_4V9F_011

Geometric discrepancy: 0.1428

The information below is about HL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

5JUU|1|A|C|70
5JUU|1|A|A|71
5JUU|1|A|A|72
5JUU|1|A|U|73
5JUU|1|A|U|74
5JUU|1|A|U|75
5JUU|1|A|A|76
5JUU|1|A|U|77
5JUU|1|A|A|78
5JUU|1|A|C|79
5JUU|1|A|A|80
5JUU|1|A|G|81

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain DB

eS6 (yeast S6)