HL_5JUU_013

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGGCCCAUUCGGGUCU

Length

16 nucleotides

Bulged bases

5JUU|1|A|U|493, 5JUU|1|A|U|494, 5JUU|1|A|C|495

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUU|1|A|G|486
5JUU|1|A|G|487
5JUU|1|A|G|488
5JUU|1|A|C|489
5JUU|1|A|C|490
5JUU|1|A|C|491
5JUU|1|A|A|492
5JUU|1|A|U|493
5JUU|1|A|U|494
5JUU|1|A|C|495
5JUU|1|A|G|496
5JUU|1|A|G|497
5JUU|1|A|G|498
5JUU|1|A|U|499
5JUU|1|A|C|500
5JUU|1|A|U|501

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain BC

eS30 (yeast S30)