HL_5JUU_023

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

5JUU|1|A|U|1057

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUU_023 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.385

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

5JUU|1|A|U|1055
5JUU|1|A|U|1056
5JUU|1|A|U|1057
5JUU|1|A|U|1058
5JUU|1|A|U|1059
5JUU|1|A|U|1060
5JUU|1|A|A|1061
5JUU|1|A|A|1062
5JUU|1|A|U|1063
5JUU|1|A|G|1064

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain YA

eS1 (yeast S1)

Chain YB

eS27 (yeast S27)