HL_5JUU_033
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CAUUGUAAUUAUUG
- Length
- 14 nucleotides
- Bulged bases
- 5JUU|1|A|A|1559
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JUU|1|A|C|1549
5JUU|1|A|A|1550
5JUU|1|A|U|1551
5JUU|1|A|U|1552
5JUU|1|A|G|1553
5JUU|1|A|U|1554
5JUU|1|A|A|1555
5JUU|1|A|A|1556
5JUU|1|A|U|1557
5JUU|1|A|U|1558
5JUU|1|A|A|1559
5JUU|1|A|U|1560
5JUU|1|A|U|1561
5JUU|1|A|G|1562
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain AC
- uS14 (yeast S29)
- Chain MB
- uS19 (yeast S15)
- Chain PB
- uS13 (yeast S18)
- Chain QB
- eS19 (yeast S19)
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