HL_5JUU_041

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

5JUU|1|B|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUU_041 not in the Motif Atlas

Homologous match to HL_5TBW_005

Geometric discrepancy: 0.1448

The information below is about HL_5TBW_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

5JUU|1|B|U|194
5JUU|1|B|U|195
5JUU|1|B|G|196
5JUU|1|B|G|197
5JUU|1|B|A|198
5JUU|1|B|A|199
5JUU|1|B|C|200
5JUU|1|B|A|201

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain DA

uL24 (yeast L26)

Chain H

uL4 (yeast L4)

Chain JA

eL32 (yeast L32)