HL_5JUU_048

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUUUUGUGCGCAUUUC

Length

16 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUU|1|B|G|445
5JUU|1|B|U|446
5JUU|1|B|U|447
5JUU|1|B|U|448
5JUU|1|B|U|449
5JUU|1|B|G|450
5JUU|1|B|U|451
5JUU|1|B|G|452
5JUU|1|B|C|453
5JUU|1|B|G|483
5JUU|1|B|C|484
5JUU|1|B|A|485
5JUU|1|B|U|486
5JUU|1|B|U|487
5JUU|1|B|U|488
5JUU|1|B|C|489

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain J

eL6 (yeast L6)