HL_5JUU_060

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

5JUU|1|B|U|1028

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUU_060 not in the Motif Atlas

Homologous match to HL_5TBW_023

Geometric discrepancy: 0.4742

The information below is about HL_5TBW_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5JUU|1|B|C|1023
5JUU|1|B|G|1024
5JUU|1|B|A|1025
5JUU|1|B|A|1026
5JUU|1|B|A|1027
5JUU|1|B|U|1028
5JUU|1|B|G|1029

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain MB

uS19 (yeast S15)

Chain O

uL5 (yeast L11)

Chain PB

uS13 (yeast S18)