Loop HL_5JUU

3D structure

PDB id: 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
Description: Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å

Loop

Sequence: CGGGUAGUGAGGGCCUGACGGCCUUGGUAGGCGUCGCUUGCUACAACG
Length: 48 nucleotides
Bulged bases: 5JUU|1|B|U|1966, 5JUU|1|B|A|2088
QA status: Missing nucleotides

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5JUU|1|B|C|1951
5JUU|1|B|G|1952
5JUU|1|B|G|1953
5JUU|1|B|G|1954
5JUU|1|B|U|1955
5JUU|1|B|A|1956
5JUU|1|B|G|1957
5JUU|1|B|U|1958
5JUU|1|B|G|1959
5JUU|1|B|A|1960
5JUU|1|B|G|1961
5JUU|1|B|G|1962
5JUU|1|B|G|1963
5JUU|1|B|C|1964
5JUU|1|B|C|1965
5JUU|1|B|U|1966
5JUU|1|B|G|2048
5JUU|1|B|A|2049
5JUU|1|B|C|2050
5JUU|1|B|G|2051
5JUU|1|B|G|2052
5JUU|1|B|C|2053
5JUU|1|B|C|2054
5JUU|1|B|U|2055
5JUU|1|B|U|2056
5JUU|1|B|G|2057
5JUU|1|B|G|2058
5JUU|1|B|U|2059
5JUU|1|B|A|2060
5JUU|1|B|G|2061
5JUU|1|B|G|2062
5JUU|1|B|C|2075
5JUU|1|B|G|2076
5JUU|1|B|U|2077
5JUU|1|B|C|2078
5JUU|1|B|G|2079
5JUU|1|B|C|2080
5JUU|1|B|U|2081
5JUU|1|B|U|2082
5JUU|1|B|G|2083
5JUU|1|B|C|2084
5JUU|1|B|U|2085
5JUU|1|B|A|2086
5JUU|1|B|C|2087
5JUU|1|B|A|2088
5JUU|1|B|A|2093
5JUU|1|B|C|2094
5JUU|1|B|G|2095

Current chains

Chain B: 25S ribosomal RNA

Nearby chains

Chain FB: eS8 (yeast S8)
Chain IB: uS17 (yeast S11)
Chain PA: eL38 (yeast L38)
Chain W: eL19 (yeast L19)

HL_5JUU_081