HL_5JUU_088

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

5JUU|1|B|A|2372, 5JUU|1|B|A|2373, 5JUU|1|B|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUU_088 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.1142

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

5JUU|1|B|G|2369
5JUU|1|B|G|2370
5JUU|1|B|G|2371
5JUU|1|B|A|2372
5JUU|1|B|A|2373
5JUU|1|B|C|2374
5JUU|1|B|G|2375
5JUU|1|B|G|2376
5JUU|1|B|G|2377
5JUU|1|B|C|2378

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain G

uL3 (yeast L3)

Chain JA

eL32 (yeast L32)

Chain KA

eL33 (yeast L33)