HL_5JUU_115

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGAAAACUCUCCGAACACGA*G

Length

21 nucleotides

Bulged bases

5JUU|1|EC|G|6789, 5JUU|1|EC|A|6791, 5JUU|1|EC|A|6792, 5JUU|1|EC|C|6803, 5JUU|1|EC|A|6807

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUU|1|EC|C|6788
5JUU|1|EC|G|6789
5JUU|1|EC|A|6790
5JUU|1|EC|A|6791
5JUU|1|EC|A|6792
5JUU|1|EC|A|6793
5JUU|1|EC|C|6794
5JUU|1|EC|U|6795
5JUU|1|EC|C|6796
5JUU|1|EC|U|6797
5JUU|1|EC|C|6798
5JUU|1|EC|C|6799
5JUU|1|EC|G|6800
5JUU|1|EC|A|6801
5JUU|1|EC|A|6802
5JUU|1|EC|C|6803
5JUU|1|EC|A|6804
5JUU|1|EC|C|6805
5JUU|1|EC|G|6808
5JUU|1|EC|A|6807
*
5JUU|1|EC|G|6808

Current chains

Chain EC

IRES

Nearby chains