HL_5JUU_116

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUAUUUAG

Length

8 nucleotides

Bulged bases

5JUU|1|EC|U|6839, 5JUU|1|EC|A|6840, 5JUU|1|EC|U|6841, 5JUU|1|EC|U|6842, 5JUU|1|EC|U|6843

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUU|1|EC|C|6838
5JUU|1|EC|U|6839
5JUU|1|EC|A|6840
5JUU|1|EC|U|6841
5JUU|1|EC|U|6842
5JUU|1|EC|U|6843
5JUU|1|EC|A|6844
5JUU|1|EC|G|6845

Current chains

Chain EC

IRES

Nearby chains

Chain CB

uS7 (yeast S5)

Chain ZB

eS28 (yeast S28)