HL_5JUU_117

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UAACAUAGGCAGCCCCAAAA*A

Length

21 nucleotides

Bulged bases

5JUU|1|EC|C|6857, 5JUU|1|EC|A|6858, 5JUU|1|EC|U|6859, 5JUU|1|EC|A|6860, 5JUU|1|EC|G|6861, 5JUU|1|EC|G|6862, 5JUU|1|EC|C|6863, 5JUU|1|EC|A|6864, 5JUU|1|EC|G|6865, 5JUU|1|EC|C|6866, 5JUU|1|EC|C|6867, 5JUU|1|EC|C|6868, 5JUU|1|EC|C|6869, 5JUU|1|EC|A|6870, 5JUU|1|EC|A|6871, 5JUU|1|EC|A|6872, 5JUU|1|EC|A|6873

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUU|1|EC|U|6854
5JUU|1|EC|A|6855
5JUU|1|EC|A|6874
5JUU|1|EC|C|6857
5JUU|1|EC|A|6858
5JUU|1|EC|U|6859
5JUU|1|EC|A|6860
5JUU|1|EC|G|6861
5JUU|1|EC|G|6862
5JUU|1|EC|C|6863
5JUU|1|EC|A|6864
5JUU|1|EC|G|6865
5JUU|1|EC|C|6866
5JUU|1|EC|C|6867
5JUU|1|EC|C|6868
5JUU|1|EC|C|6869
5JUU|1|EC|A|6870
5JUU|1|EC|A|6871
5JUU|1|EC|A|6872
5JUU|1|EC|A|6873
*
5JUU|1|EC|A|6874

Current chains

Chain EC

IRES

Nearby chains

Chain WB

eS25 (yeast S25)