HL_5JVH_006

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

GGAACUGAAACAUCUCAGUAC

Length

21 nucleotides

Bulged bases

5JVH|1|X|A|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JVH|1|X|G|165
5JVH|1|X|G|166
5JVH|1|X|A|167
5JVH|1|X|A|168
5JVH|1|X|C|169
5JVH|1|X|U|170
5JVH|1|X|G|171
5JVH|1|X|A|172
5JVH|1|X|A|173
5JVH|1|X|A|174
5JVH|1|X|C|175
5JVH|1|X|A|176
5JVH|1|X|U|177
5JVH|1|X|C|178
5JVH|1|X|U|179
5JVH|1|X|C|180
5JVH|1|X|A|181
5JVH|1|X|G|182
5JVH|1|X|U|183
5JVH|1|X|A|184
5JVH|1|X|C|185

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L15

Chain U

50S ribosomal protein L28