HL_5JVH_010

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CUCAG

Length

5 nucleotides

Bulged bases

5JVH|1|X|C|332, 5JVH|1|X|A|333

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JVH_010 not in the Motif Atlas

Homologous match to HL_7A0S_011

Geometric discrepancy: 0.2309

The information below is about HL_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5JVH|1|X|C|330
5JVH|1|X|U|331
5JVH|1|X|C|332
5JVH|1|X|A|333
5JVH|1|X|G|334

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain R

50S ribosomal protein L24