HL_5JVH_011

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

GGUGAGAGUCC

Length

11 nucleotides

Bulged bases

5JVH|1|X|G|340, 5JVH|1|X|A|341, 5JVH|1|X|G|342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JVH_011 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1867

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5JVH|1|X|G|337
5JVH|1|X|G|338
5JVH|1|X|U|339
5JVH|1|X|G|340
5JVH|1|X|A|341
5JVH|1|X|G|342
5JVH|1|X|A|343
5JVH|1|X|G|344
5JVH|1|X|U|345
5JVH|1|X|C|346
5JVH|1|X|C|347

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain P

50S ribosomal protein L22

Chain R

50S ribosomal protein L24