HL_5JVH_012

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

GUUCGUGAAAC

Length

11 nucleotides

Bulged bases

5JVH|1|X|G|399, 5JVH|1|X|A|402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JVH_012 not in the Motif Atlas

Homologous match to HL_7A0S_013

Geometric discrepancy: 0.1206

The information below is about HL_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.8

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5JVH|1|X|G|395
5JVH|1|X|U|396
5JVH|1|X|U|397
5JVH|1|X|C|398
5JVH|1|X|G|399
5JVH|1|X|U|400
5JVH|1|X|G|401
5JVH|1|X|A|402
5JVH|1|X|A|403
5JVH|1|X|A|404
5JVH|1|X|C|405

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L28