HL_5JVH_028

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JVH_028 not in the Motif Atlas

Geometric match to HL_5J7L_154

Geometric discrepancy: 0.3651

The information below is about HL_5J7L_154

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5JVH|1|X|C|1103
5JVH|1|X|G|1104
5JVH|1|X|U|1105
5JVH|1|X|A|1106
5JVH|1|X|A|1107
5JVH|1|X|U|1108
5JVH|1|X|A|1109
5JVH|1|X|G|1110

Current chains

Chain X

23S ribosomal RNA

Nearby chains