HL_5JVH_034

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

GUCAAGAUUC

Length

10 nucleotides

Bulged bases

5JVH|1|X|U|1409, 5JVH|1|X|U|1410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JVH_034 not in the Motif Atlas

Homologous match to HL_7A0S_035

Geometric discrepancy: 0.1588

The information below is about HL_7A0S_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5JVH|1|X|G|1402
5JVH|1|X|U|1403
5JVH|1|X|C|1404
5JVH|1|X|A|1405
5JVH|1|X|A|1406
5JVH|1|X|G|1407
5JVH|1|X|A|1408
5JVH|1|X|U|1409
5JVH|1|X|U|1410
5JVH|1|X|C|1411

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L23