HL_5JVH_037

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CCUCGG

Length

6 nucleotides

Bulged bases

5JVH|1|X|U|1551, 5JVH|1|X|C|1552

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JVH_037 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.2095

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5JVH|1|X|C|1549
5JVH|1|X|C|1550
5JVH|1|X|U|1551
5JVH|1|X|C|1552
5JVH|1|X|G|1553
5JVH|1|X|G|1554

Current chains

Chain X

23S ribosomal RNA

Nearby chains