HL_5JVH_039

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

5JVH|1|X|A|1632, 5JVH|1|X|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JVH_039 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.1059

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

5JVH|1|X|C|1628
5JVH|1|X|G|1629
5JVH|1|X|A|1630
5JVH|1|X|C|1631
5JVH|1|X|A|1632
5JVH|1|X|C|1633
5JVH|1|X|A|1634
5JVH|1|X|G|1635

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain P

50S ribosomal protein L22