HL_5JVH_045

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

5JVH|1|X|C|1801

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JVH_045 not in the Motif Atlas

Homologous match to HL_7A0S_046

Geometric discrepancy: 0.1105

The information below is about HL_7A0S_046

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5JVH|1|X|C|1797
5JVH|1|X|G|1798
5JVH|1|X|A|1799
5JVH|1|X|A|1800
5JVH|1|X|C|1801
5JVH|1|X|A|1802
5JVH|1|X|G|1803

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain U

50S ribosomal protein L28