HL_5JVH_049

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

GUAAAGAUGC

Length

10 nucleotides

Bulged bases

5JVH|1|X|A|2013, 5JVH|1|X|A|2014, 5JVH|1|X|G|2015, 5JVH|1|X|U|2017, 5JVH|1|X|G|2018

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JVH_049 not in the Motif Atlas

Homologous match to HL_7A0S_049

Geometric discrepancy: 0.1805

The information below is about HL_7A0S_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

5JVH|1|X|G|2010
5JVH|1|X|U|2011
5JVH|1|X|A|2012
5JVH|1|X|A|2013
5JVH|1|X|A|2014
5JVH|1|X|G|2015
5JVH|1|X|A|2016
5JVH|1|X|U|2017
5JVH|1|X|G|2018
5JVH|1|X|C|2019

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13

Chain Z

50S ribosomal protein L32