HL_5JVH_052

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

5JVH|1|X|G|2229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JVH_052 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.0905

The information below is about HL_7A0S_052

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

5JVH|1|X|C|2227
5JVH|1|X|U|2228
5JVH|1|X|G|2229
5JVH|1|X|G|2230
5JVH|1|X|G|2231
5JVH|1|X|G|2232
5JVH|1|X|C|2233
5JVH|1|X|G|2234
5JVH|1|X|G|2235

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L16