HL_5JVH_067
3D structure
- PDB id
- 5JVH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.58 Å
Loop
- Sequence
- GAAGACCAC
- Length
- 9 nucleotides
- Bulged bases
- 5JVH|1|X|A|2795
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JVH_067 not in the Motif Atlas
- Homologous match to HL_7A0S_067
- Geometric discrepancy: 0.0667
- The information below is about HL_7A0S_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_37889.2
- Basepair signature
- cWW-cSW-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
5JVH|1|X|G|2794
5JVH|1|X|A|2795
5JVH|1|X|A|2796
5JVH|1|X|G|2797
5JVH|1|X|A|2798
5JVH|1|X|C|2799
5JVH|1|X|C|2800
5JVH|1|X|A|2801
5JVH|1|X|C|2802
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3
- Chain K
- 50S ribosomal protein L17
- Chain M
- 50S ribosomal protein L19
Coloring options: