HL_5JVH_073

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

AGAAAAUCU

Length

9 nucleotides

Bulged bases

5JVH|1|X|A|1509, 5JVH|1|X|U|1513

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JVH_073 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.315

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.2

Basepair signature

cWW-cWW

Number of instances in this motif group

3

Unit IDs

5JVH|1|X|A|1507
5JVH|1|X|G|1508
5JVH|1|X|A|1509
5JVH|1|X|A|1510
5JVH|1|X|A|1511
5JVH|1|X|A|1512
5JVH|1|X|U|1513
5JVH|1|X|C|1514
5JVH|1|X|U|1515

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2