HL_5JVH_075
3D structure
- PDB id
- 5JVH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.58 Å
Loop
- Sequence
- AAAAUCACUU
- Length
- 10 nucleotides
- Bulged bases
- 5JVH|1|X|A|2191
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JVH_075 not in the Motif Atlas
- Homologous match to HL_7A0S_051
- Geometric discrepancy: 0.4314
- The information below is about HL_7A0S_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38046.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
5JVH|1|X|A|2188
5JVH|1|X|A|2189
5JVH|1|X|A|2190
5JVH|1|X|A|2191
5JVH|1|X|U|2192
5JVH|1|X|C|2193
5JVH|1|X|A|2194
5JVH|1|X|C|2195
5JVH|1|X|U|2196
5JVH|1|X|U|2197
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain A
- 50S ribosomal protein L2
- Chain U
- 50S ribosomal protein L28
Coloring options: