HL_5KCS_026

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

5KCS|1|1A|A|980, 5KCS|1|1A|A|983, 5KCS|1|1A|A|984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KCS_026 not in the Motif Atlas

Homologous match to HL_7A0S_027

Geometric discrepancy: 0.2727

The information below is about HL_7A0S_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

5KCS|1|1A|G|978
5KCS|1|1A|A|979
5KCS|1|1A|A|980
5KCS|1|1A|A|981
5KCS|1|1A|C|982
5KCS|1|1A|A|983
5KCS|1|1A|A|984
5KCS|1|1A|C|985

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1U

50S ribosomal protein L20

Chain 1V

50S ribosomal protein L21