HL_5KCS_028

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGACGCUUAUGCGUUG

Length

16 nucleotides

Bulged bases

5KCS|1|1A|U|1174, 5KCS|1|1A|A|1175

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5KCS|1|1A|C|1167
5KCS|1|1A|G|1168
5KCS|1|1A|A|1169
5KCS|1|1A|C|1170
5KCS|1|1A|G|1171
5KCS|1|1A|C|1172
5KCS|1|1A|U|1173
5KCS|1|1A|U|1174
5KCS|1|1A|A|1175
5KCS|1|1A|U|1176
5KCS|1|1A|G|1177
5KCS|1|1A|C|1178
5KCS|1|1A|G|1179
5KCS|1|1A|U|1180
5KCS|1|1A|U|1181
5KCS|1|1A|G|1182

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 13

50S ribosomal protein L30

Chain 1V

50S ribosomal protein L21