HL_5KCS_034

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCGACGGUUGUC

Length

12 nucleotides

Bulged bases

5KCS|1|1A|A|1453, 5KCS|1|1A|C|1454, 5KCS|1|1A|U|1460

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5KCS|1|1A|G|1450
5KCS|1|1A|C|1451
5KCS|1|1A|G|1452
5KCS|1|1A|A|1453
5KCS|1|1A|C|1454
5KCS|1|1A|G|1455
5KCS|1|1A|G|1456
5KCS|1|1A|U|1457
5KCS|1|1A|U|1458
5KCS|1|1A|G|1459
5KCS|1|1A|U|1460
5KCS|1|1A|C|1461

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1R

50S ribosomal protein L17