HL_5KCS_039

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAGAGAAUA

Length

9 nucleotides

Bulged bases

5KCS|1|1A|A|1634

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KCS_039 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.2798

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5KCS|1|1A|U|1629
5KCS|1|1A|A|1630
5KCS|1|1A|G|1631
5KCS|1|1A|A|1632
5KCS|1|1A|G|1633
5KCS|1|1A|A|1634
5KCS|1|1A|A|1635
5KCS|1|1A|U|1636
5KCS|1|1A|A|1637

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains